Scottish Marine and Freshwater Science Vol 6 No 16: Genetic Assignment of Marine-Caught Adult Salmon at Armadale to Region of Origin

References

Anon. 2011. 2020 Routemap for renewable energy in Scotland. ISBN 978 178045 271 5.
Available at http://www.gov.scot/Publications/2011/08/04110353/0
(Last accessed10 ^th March 2015).

Bourret, V., Kent, M. P., Primmer, C. R., Vasemägi, A., Karlsson, S., Hindar, K., McGinnity, P., Verspoor, E., Bernatchez, L., and Lien, S. 2013. SNP-array reveals genome-wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon ( Salmo salar). Molecular Ecology, 22: 532-551.

Calderwood, W.L. (1920) Salmon Research in 1920 - sea netting results. Fisheries, Scotland, Salmon, Fish., 1920 No. I

Gilbey, J., Cauwelier, E., Coulson, M.W., Stradmeyer, L., Sampayo, J., Armstrong, A., Verspoor, E., Corrigan, L., Shelley, J., and Middlemas, S. Accuracy of assignment of Atlantic salmon ( Salmo salar L.) to rivers and regions in Scotland and northeast England based on single nucleotide polymorphism ( SNP) markers. Submitted to PlosOne Nov 2015.

Gill, A.B. 2005. Offshore renewable energy: ecological implications of generating electricity in the coastal zone. Journal of Applied Ecology, 42, 605-615.

Gill, A.B., Bartlett, M., and Thomsen, F. 2012. Potential interactions between diadromous fishes of U.K. conservation importance and the electromagnetic fields and subsea noise from marine renewable energy developments. Journal of Fish Biology, 81, 664-695.

Godfrey, J.D., Stewart, D.C., Middlemas, S.J. and Armstrong, J.D. 2014. Depth use and movements of homing Atlantic salmon ( Salmo salar) in Scottish coastal waters in relation to marine renewable energy development. Scottish Marine and Freshwater Science Report 5/18.

Godfrey, J.D., Stewart, D.C., Middlemas, S.J. & Armstrong, J.D. 2015. Depth use and migratory behaviour of homing Atlantic salmon ( Salmo salar) in Scottish coastal waters. ICES Journal of Marine Science, 72, 568-575.

Hess, J. E., Matala, A. P., and Narum, S. R. 2011. Comparison of SNPs and microsatellites for fine-scale application of genetic stock identification of Chinook salmon in the Columbia river Basin. Molecular Ecology Resources, 11, 137-149.

Hess, J.E., Whiteaker, J.M., Fryer, J.F., and Narum, S.R. 2014. Monitoring stock-specific abundance, run timing and straying of Chinook salmon in the Columbia river using genetic stock identification ( GSI). North American Journal of Fisheries Management, 34, 184-201.

Kalinowski, S.T., Manlove, K.R., and Taper, M.L. 2007. ONCOR: a computer program for genetic stock identification. Department of Ecology, 310 Lewis Hall,Montana State University.
Available from http://www.montana.edu/kalinowski/Software/ONCOR.htm,

Larson, W.A., Seeb, J.E., Pascal, C.E., Templin, W.D., and Seeb, L.W. 2014. Single-nucleotide polymorphisms ( SNPs) identifed through genotyping-by-sequencing improve genetic stock identification of Chinook salmon ( Oncorhynchus tshawytscha) from western Alaska. Canadian Journal of Fisheries and Aquatic Sciences, 71: 698-708.

Malcolm, I.A., Godfrey, J.D. and Youngson, A.F. 2010. Review of migratory routes and behaviour of Atlantic salmon, sea trout and European eel in Scotland's coastal environment: implications for the development of marine renewables. Scottish Marine and Freshwater Science. 1, 14: 1-72.
Available at http://www.gov.scot/Resource/Doc/295194/0111162.pdf
(Last accessed 18 ^th March 2015).

Marine Scotland Science 2013. Salmon and sea trout catches 2013.
Available at http://www.gov.scot/Topics/marine/Publications/stats/SalmonSeaTroutCatches/Final2013

Menzies, W.J.M. (1937) The Movements of Salmon Marked in the Sea I. The Northwest Coast of Scotland in 1936 Fisheries, Scotland, Salmon Fish, 1937, No. 1

Menzies, W.J.M. (1938a) The Movements of Salmon Marked in the Sea II. The WestCoast of Sutherland in 1937. Fisheries, Scotland, Salmon Fish, 1938, No. 1

Menzies, W.J.M. (1938b) The Movements of Salmon Marked in the Sea III. TheIsland of Soay and Ardnamurchan in 1938. Fisheries, Scotland, Salmon Fish, 1938,No. VII

Piry, S., Alapetite, A., Cornuet, J. M., Paetkau, D., Baudouin, L., and Estoup, A. 2004. GENECLASS2: A software for genetic assignment and first-generation migrant detection. Journal of Heredity, 95: 536-539.

Rannala, B., and Mountain, J. L. 1997. Detecting immigration by using multilocus genotypes. Proceedings of the National Academy of Science, USA., 94: 9197-9201.

Shearer, W.M. 1992. The Atlantic salmon: natural history, exploitation and future management. Oxford, Fishing News Books.

Slabbekoorn, H., Bouton, N., van Opzeeland, I., Coers, A., ten Cate, C., and Popper, A.N. 2010. A noisy spring: the impact of globally rising underwater sound levels on fish. Trends in Ecology and Evolution, 25, 419-427.