Harbour and grey seals: distribution maps

7. References

Aarts, G., MacKenzie, M., McConnell, B., Fedak, M., & Matthiopoulos, J. (2008). Estimating space-use and habitat preference from wildlife telemetry data. Ecography, 31, 140–160.

Baston, D. (2023). R package ‘exactextractr’: fast extraction from raster datasets using polygons (0.10.0).

Beyer, H. L., Haydon, D. T., Morales, J. M., Frair, J. L., Hebblewhite, M., Mitchell, M., & Matthiopoulos, J. (2010). The interpretation of habitat preference metrics under use-availability designs. Philosophical Transactions of the Royal Society B: Biological Sciences, 365, 2245–2254.

Carroll, E. L., Hall, A., Olsen, M. T., Onoufriou, A. B., Gaggiotti, O. E., & Russell, D. J. F. (2020). Perturbation drives changing metapopulation dynamics in a top marine predator. Proceedings of the Royal Society B, 287(1928), 20200318.

Carter, M. I. D., Boehme, L., Cronin, M. A., Duck, C. D., Grecian, W. J., Hastie, G. D., Jessopp, M., Matthiopoulos, J., Mcconnell, B. J., Miller, D. L., Morris, C. D., Moss, S. E. W., Thompson, D., Thompson, P. M., & Russell, D. J. F. (2022). Sympatric seals, satellite tracking and protected areas: habitat-based distribution estimates for conservation and management. Frontiers in Marine Science, 9, 875869.

Carter, M. I. D., Boehme, L., Duck, C. D., Grecian, W. J., Hastie, G. D., McConnell, B. J., Miller, D. L., Morris, C. D., Moss, S. E. W., Thompson, D., Thompson, P. M., & Russell, D. J. F. (2020). Habitat-based predictions of at-sea distribution for grey and harbour seals in the British Isles. Sea Mammal Research Unit, University of St Andrews, Report to BEIS, OESEA-16-76/OESEA-17-78.

Dujon, A. M., Lindstrom, R. T., & Hays, G. C. (2014). The accuracy of Fastloc-GPS locations and implications for animal tracking. Methods in Ecology and Evolution, 5, 1162–1169.

EMODnet Bathymetry. (2020). EMODnet Digital Bathymetry (DTM 2020).

EMODnet Seabed Habitats. (2021). EMODnet Broad-scale Seabed Habitat Map for Europe (EUSeaMap).

Fieberg, J., Matthiopoulos, J., Hebblewhite, M., Boyce, M. S., & Frair, J. L. (2010). Correlation and studies of habitat selection: problem, red herring or opportunity? Philosophical Transactions of the Royal Society B: Biological Sciences, 365, 2233–2244.

Hijmans, R. (2023). R package ‘terra’: spatial data analysis (1.7-39).

Jasiewicz, J., & Stepinski, T. F. (2013). Geomorphons - a pattern recognition approach to classification and mapping of landforms. Geomorphology, 182, 147–156.

Johnson, D. H. (1980). The comparison of usage and availability measurements for evaluating resource preference. Ecology, 61(1), 65–71.

Jones, E. L., McConnell, B. J., Smout, S., Hammond, P. S., Duck, C. D., Morris, C. D., Thompson, D., Russell, D. J. F., Vincent, C., Cronin, M., Sharples, R. J., & Matthiopoulos, J. (2015). Patterns of space use in sympatric marine colonial predators reveal scales of spatial partitioning. Marine Ecology Progress Series, 534, 235–249.

Jones, S. (2024). Monthly Potential Energy Anomaly (PEA) climatology for the European shelf [Data set]

Lüdecke, D., Ben-Shachar, M., Patil, I., Waggoner, P., & Makowski, D. (2021). performance: An R Package for Assessment, Comparison and Testing of Statistical Models. Journal of Open Source Software, 6(60), 3139.

Manly, B. F. J., McDonald, L. L., Thomas, D. L., McDonald, T. L., & Erickson, W. P. (2002). Resource selection by animals: statistical design and analysis for field studies (2nd ed.). Kluwer Academic Publishers.

Matthiopoulos, J. (2003). The use of space by animals as a function of accessibility and preference. Ecological Modelling, 159(2–3), 239–268.

McConnell, B. J., Beaton, R., Bryant, E., Hunter, C., Lovell, P., & Hall, A. (2004). Phoning home - a new GSM mobile phone telemetry system to collect mark-recapture data. Marine Mammal Science, 20(2), 274–283.

Moxley, J. H., Skomal, G., Chisholm, J., Halpin, P., & Johnston, D. W. (2020). Daily and seasonal movements of Cape Cod gray seals vary with predation risk. Marine Ecology Progress Series, 644, 215–228.

Neteler, M., & Mitasova, H. (2007). Open Source GIS: A GRASS GIS Approach (3rd ed.). Springer Verlag.

Pebesma, E., & Bivand, R. (2023). Spatial Data Science: With Applications in R (1.0-9). Chapman & Hall/CRC Press.

R Core Team. (2023). R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria (4.3.1).

Russell, D. J. F., Brasseur, S. M. J. M., Thompson, D., Hastie, G. D., Janik, V. M., Aarts, G., McClintock, B. T., Matthiopoulos, J., Moss, S. E. W., & McConnell, B. (2014). Marine mammals trace anthropogenic structures at sea. Current Biology, 24(14), R638–R639.

Russell, D. J. F., & Carter, M. I. D. (2020). Regional baselines for marine mammal knowledge across the North Sea and Atlantic areas of Scottish waters: Appendix 4 - Seal abundance and distribution. In Scottish Marine and Freshwater Science. https://doi.org/10.7489/12330-1

Russell, D. J. F., Duck, C. D., Morris, C. D., Riddoch, N. G., & Thompson, D. (2022). Trends in seal abundance and grey seal pup production. SCOS Briefing Paper 22/02, Sea Mammal Research Unit, University of St Andrews.

Russell, D. J. F., Hastie, G. D., Thompson, D., Janik, V., Hammond, P. S., Scott-Haywood, L., Matthiopoulos, J., Jones, E., & McConnell, B. J. (2016). Avoidance of windfarms by harbour seals is limited to pile driving activities. Journal of Applied Ecology, 53(6), 1642–1652. https://doi.org/10.1111/1365-2664.12678

Russell, D. J. F., Jones, E. L., & Morris, C. D. (2017). Updated seal usage maps: the estimated at-sea distribution of grey and harbour seals. Scottish Marine and Freshwater Science, 8 (25).

SCOS. (2022). Scientific advice on matters related to the management of seal populations: 2022. Special Committee on Seals (SCOS) Main Advice Report.

Thompson, D., Duck, C. D., Morris, C. D., & Russell, D. J. F. (2019). The status of harbour seals (Phoca vitulina) in the UK. Aquatic Conservation: Marine and Freshwater Ecosystems, 29(S1), 40–60.

Whyte, K. F., Russell, D. J. F., Sparling, C. E., Binnerts, B., & Hastie, G. D. (2020). Estimating the impacts of pile driving sounds on seals: pitfalls and possibilities. Journal of the Acousticical Society of America, 147, 3948–3958.

Wood, S. N. (2017). Generalized additive models: an introduction with R. Second Edition. Chapman & Hall/CRC Press.

Wyles, H. M. E., Boehme, L., Russell, D. J. F., & Carter, M. I. D. (2022). A novel approach to using seabed geomorphology as a predictor of habitat use in highly mobile marine predators: implications for ecology and conservation. Frontiers in Marine Science, 9, 818635.